Images and videos for varying anisotropies 1, 10, 30 using a scaled ImageSC command [0 2.5e5]

Tumour slice series, r-factor 01 (anisotropy = water).

 

 Tumour Series for r factor 10, as Jbabdi et al, 10x water diffusion coefficient.

Slice series for r-factor 30.

07/06/2015.

 Tasks for week ahead:

1. Make a movie of tumour growth using imageSc scaled properly.
2. Establish a way of extracting the brain and skull(do not think it's in the DICOMs actually) outlines for 2D and 3D images.  Look at isocaps command in MATLAB.
3. Write code for new anisotropy measure using the discrete gradient measure.
4. Investigate anatomical boundaries for tumour growth in our code, may need to add in the Falx, if not automatically segmented via FSL brain mask, we could do this manually as a centreline of zero flux with the coordinates of the corpus calossum being the only connection of the two hemispheres as is anatomically realistic.

Task 01: animations

Animation for rf01

Animation for rf10

Animation for rf30